If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ), 'gf_id' => 'HOM05D000974', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000974' ), 'data_identifier' => 'HOM05D000974', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000974', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '616', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p15320' => 'bna', 'A05p44810' => 'bna', 'A06p06550' => 'bna', 'A06p28170' => 'bna', 'A06p34970' => 'bna', 'A07p04420' => 'bna', 'A08p34320' => 'bna', 'A10p07850' => 'bna', 'A10p10690' => 'bna', 'Aa31LG11G3400' => 'aar', 'Aa31LG1G5090' => 'aar', 'Aa31LG3G9300' => 'aar', 'Aa31LG5G12470' => 'aar', 'Aa31LG8G1210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1315' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1734' => 'aag', 'Actinidia03159' => 'ach', 'Actinidia08630' => 'ach', 'Actinidia17556' => 'ach', 'Actinidia26227' => 'ach', 'Actinidia31867' => 'ach', 'Actinidia31868' => 'ach', 'Actinidia31869' => 'ach', 'Actinidia34202' => 'ach', 'Actinidia38994' => 'ach', 'Ah.07g205990' => 'amhyb', 'Ah.08g220180' => 'amhyb', 'Ah.10g031680' => 'amhyb', 'Ah.11g043350' => 'amhyb', 'Ah.13g069920' => 'amhyb', 'Ah.13g069930' => 'amhyb', 'AL1G20430' => 'aly', 'AL3G11110' => 'aly', 'AL6G35490' => 'aly', 'AL8G27830' => 'aly', 'Aqoxy1G01816' => 'aox', 'Aqoxy3G00631' => 'aox', 'Aqoxy3G00632' => 'aox', 'Aqoxy3G03436' => 'aox', 'Aqoxy5G04190' => 'aox', 'Aqoxy7G00132' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CS5BR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0Q8MRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IC4JN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5FDUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DWF5LU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF9LB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9FX3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG8YER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT2KYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N493LC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9F21C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY06FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0E42N' => 'arhy', 'AT1G09830' => 'ath', 'AT3G01150' => 'ath', 'AT5G24130' => 'ath', 'AT5G53180' => 'ath', 'ATR0320G016' => 'atr', 'ATR0564G528' => 'atr', 'ATR0589G008' => 'atr', 'ATR0589G055' => 'atr', 'ATR0598G043' => 'atr', 'Atru.chr1.244' => 'acertr', 'Atru.chr1.258' => 'acertr', 'Atru.chr1.262' => 'acertr', 'Atru.chr1.4075' => 'acertr', 'Atru.chr8.287' => 'acertr', 'Atru.chr9.317' => 'acertr', 'AUR62001730' => 'cqu', 'AUR62006145' => 'cqu', 'AUR62006147' => 'cqu', 'AUR62019342' => 'cqu', 'AUR62019343' => 'cqu', 'AUR62020045' => 'cqu', 'AUR62034430' => 'cqu', 'AUR62039787' => 'cqu', 'AUR62039788' => 'cqu', 'BcaB01g04230' => 'bca', 'BcaB03g13286' => 'bca', 'BcaB03g13541' => 'bca', 'BcaB05g22021' => 'bca', 'BcaB08g35680' => 'bca', 'BcaC01g01590' => 'bca', 'BcaC01g02641' => 'bca', 'BcaC01g06226' => 'bca', 'BcaC04g19187' => 'bca', 'BcaC04g20490' => 'bca', 'BcaC05g24841' => 'bca', 'BcaC05g30386' => 'bca', 'BcaC05g30490' => 'bca', 'BcaC07g38528' => 'bca', 'BcaC09g47675' => 'bca', 'BcaNung01212' => 'bca', 'BcaNung01815' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00100' => 'bna', 'BolC1t05927H' => 'bol', 'BolC1t05931H' => 'bol', 'BolC3t14196H' => 'bol', 'BolC3t18510H' => 'bol', 'BolC5t29546H' => 'bol', 'BolC5t35120H' => 'bol', 'BolC7t44885H' => 'bol', 'BolC8t48951H' => 'bol', 'BolC9t57166H' => 'bol', 'BraA01t04639Z' => 'bra', 'BraA03t10825Z' => 'bra', 'BraA05t23176Z' => 'bra', 'BraA06t23866Z' => 'bra', 'BraA06t26421Z' => 'bra', 'BraA07t28236Z' => 'bra', 'BraA08t35343Z' => 'bra', 'BraA10t43150Z' => 'bra', 'C03p17930' => 'bna', 'C03p62530' => 'bna', 'C03p74280' => 'bna', 'C05p07940' => 'bna', 'C07p43580' => 'bna', 'C08p13210' => 'bna', 'C08p14510' => 'bna', 'C09p42970' => 'bna', 'C09p75400' => 'bna', 'CAN.G589.6' => 'can', 'CAN.G855.13' => 'can', 'CANSAT21G0519' => 'cansat', 'CANSAT21G1551' => 'cansat', 'CANSAT54G1032' => 'cansat', 'CANSAT64G0124' => 'cansat', 'CARHR009850' => 'chi', 'CARHR075900' => 'chi', 'CARHR189450' => 'chi', 'CARHR266250' => 'chi', 'Carub.0001s0921' => 'cru', 'Carub.0003s0101' => 'cru', 'Carub.0006s2186' => 'cru', 'Carub.0008s1338' => 'cru', 'Ca_02899_v3' => 'car', 'Ca_04290_v3' => 'car', 'Ca_04891_v3' => 'car', 'Ca_12589_v3' => 'car', 'Ca_12682_v3' => 'car', 'Ca_12687_v3' => 'car', 'Ca_16682_v3' => 'car', 'CBR_g18997' => 'cbr', 'CBR_g36226' => 'cbr', 'Cc02_g01820' => 'ccan', 'Cc02_g01830' => 'ccan', 'Cc02_g23270' => 'ccan', 'Cc07_g03500' => 'ccan', 'Cc07_g03510' => 'ccan', 'CDE02G0137' => 'cde', 'CDE04G1010' => 'cde', 'CDE06G0125' => 'cde', 'CDE08G0241' => 'cde', 'CDE10G0242' => 'cde', 'CDE10G0750' => 'cde', 'CDE10G0850' => 'cde', 'CDE10G1260' => 'cde', 'Cfa004480' => 'cfa', 'Cfa007576' => 'cfa', 'Cfa016368' => 'cfa', 'Cfa016369' => 'cfa', 'Cfa022594' => 'cfa', 'Cfa023437' => 'cfa', 'Ciclev10000877m.g' => 'ccl', 'Ciclev10005489m.g' => 'ccl', 'Ciclev10006435m.g' => 'ccl', 'Ciclev10011680m.g' => 'ccl', 'CiPaw.03G025000' => 'cil', 'CiPaw.04G016000' => 'cil', 'CiPaw.05G257200' => 'cil', 'CiPaw.05G257300' => 'cil', 'CiPaw.05G257400' => 'cil', 'CiPaw.06G174600' => 'cil', 'ClCG00G002840' => 'cla', 'ClCG01G000550' => 'cla', 'ClCG01G000560' => 'cla', 'ClCG10G007320' => 'cla', 'COL.COLO4_02792' => 'col', 'COL.COLO4_10326' => 'col', 'COL.COLO4_17713' => 'col', 'COL.COLO4_35640' => 'col', 'COL.COLO4_38260' => 'col', 'Cpa.g.c28755' => 'cpa', 'Cpa.g.sc113.32' => 'cpa', 'Cpa.g.sc3.57' => 'cpa', 'Cpa.g.sc34.147' => 'cpa', 'Cre09.g404903' => 'cre', 'Cre18.g749497' => 'cre', 'Cre18.g749647' => 'cre', 'CsaV3_3G006560' => 'csa', 'CsaV3_5G000650' => 'csa', 'CsaV3_5G000660' => 'csa', 'CSS0002918' => 'camsi', 'CSS0010237' => 'camsi', 'CSS0011192' => 'camsi', 'CSS0011326' => 'camsi', 'CSS0022082' => 'camsi', 'CSS0023463' => 'camsi', 'CSS0025059' => 'camsi', 'CSS0027071' => 'camsi', 'CSS0033630' => 'camsi', 'CSS0036199' => 'camsi', 'CSS0038090' => 'camsi', 'CSS0038629' => 'camsi', 'CSS0048615' => 'camsi', 'CSS0048732' => 'camsi', 'DCAR_005046' => 'dca', 'DCAR_006665' => 'dca', 'DCAR_010618' => 'dca', 'DCAR_011087' => 'dca', 'DCAR_014533' => 'dca', 'DCAR_014534' => 'dca', 'DCAR_019682' => 'dca', 'DCAR_020306' => 'dca', 'DCAR_020442' => 'dca', 'DCAR_021656' => 'dca', 'DCAR_022594' => 'dca', 'DCAR_029641' => 'dca', 'Dinv11515' => 'din', 'Dinv19422' => 'din', 'Dinv28330' => 'din', 'Dinv28331' => 'din', 'Dinv29601' => 'din', 'Dinv44097' => 'din', 'Duzib052G0127' => 'dzi', 'Duzib068G0199' => 'dzi', 'Duzib084G0975' => 'dzi', 'Duzib084G1361' => 'dzi', 'Duzib132G0946' => 'dzi', 'Duzib187G0861' => 'dzi', 'Duzib205G2067' => 'dzi', 'Duzib264G0800' => 'dzi', 'ECA232G4254' => 'eca', 'ECA233G4294' => 'eca', 'ECA236G4964' => 'eca', 'EL10Ac2g02997' => 'bvu', 'EL10Ac3g05341' => 'bvu', 'EL10Ac3g05342' => 'bvu', 'EL10Ac7g16076' => 'bvu', 'Eucgr.D02255' => 'egr', 'Eucgr.G00047' => 'egr', 'Eucgr.I02773' => 'egr', 'Eucgr.I02775' => 'egr', 'Eucgr.J01358' => 'egr', 'Eucgr.K00333' => 'egr', 'FAN01G0307' => 'fan', 'FAN01G3027' => 'fan', 'FAN02G1974' => 'fan', 'FAN03G2436' => 'fan', 'FAN05G4163' => 'fan', 'FAN06G0673' => 'fan', 'FAN06G1357' => 'fan', 'FAN06G2074' => 'fan', 'FAN06G4709' => 'fan', 'FAN09G4689' => 'fan', 'FAN10G1776' => 'fan', 'FAN10G1818' => 'fan', 'FAN10G2816' => 'fan', 'FAN14G4918' => 'fan', 'FvH4_6g48200' => 'fve', 'FvH4_7g31090' => 'fve', 'FvH4_7g31120' => 'fve', 'Glyma.04G238000' => 'gma', 'Glyma.04G238050' => 'gma', 'Glyma.06G125900' => 'gma', 'Glyma.06G125951' => 'gma', 'Glyma.09G236000' => 'gma', 'Glyma.10G156900' => 'gma', 'Glyma.11G152800' => 'gma', 'Glyma.13G041500' => 'gma', 'Glyma.14G159800' => 'gma', 'Glyma.18G261000' => 'gma', 'Gohir.A01G185000' => 'ghi', 'Gohir.A05G367800' => 'ghi', 'Gohir.A08G097724' => 'ghi', 'Gohir.A09G014400' => 'ghi', 'Gohir.A09G183700' => 'ghi', 'Gohir.A12G043800' => 'ghi', 'Gohir.A12G251400' => 'ghi', 'Gohir.D01G176200' => 'ghi', 'Gohir.D03G129450' => 'ghi', 'Gohir.D04G047500' => 'ghi', 'Gohir.D05G140601' => 'ghi', 'Gohir.D08G108100' => 'ghi', 'Gohir.D09G012900' => 'ghi', 'Gohir.D09G178500' => 'ghi', 'Gohir.D12G043400' => 'ghi', 'Gohir.D12G252200' => 'ghi', 'Gorai.002G218200' => 'gra', 'Gorai.003G072600' => 'gra', 'Gorai.004G115700' => 'gra', 'Gorai.006G014900' => 'gra', 'Gorai.006G200500' => 'gra', 'Gorai.008G045600' => 'gra', 'Gorai.008G270300' => 'gra', 'Gorai.012G052900' => 'gra', 'GSVIVG01011438001' => 'vvi', 'GSVIVG01028702001' => 'vvi', 'GSVIVG01028703001' => 'vvi', 'GSVIVG01038784001' => 'vvi', 'HanXRQChr06g0176431' => 'han', 'HanXRQChr08g0216681' => 'han', 'HanXRQChr09g0253031' => 'han', 'HanXRQChr11g0329691' => 'han', 'HanXRQChr13g0392541' => 'han', 'HanXRQChr14g0462881' => 'han', 'Haze_00118' => 'cav', 'Haze_00119' => 'cav', 'Haze_10037' => 'cav', 'Haze_14510' => 'cav', 'Hma1.2p1_0302F.1_g118690' => 'hma', 'Hma1.2p1_0302F.1_g118700' => 'hma', 'Hma1.2p1_0327F.1_g126750' => 'hma', 'Hma1.2p1_0409F.1_g146850' => 'hma', 'Hma1.2p1_1655F.1_g295980' => 'hma', 'HPP92_001871' => 'vpl', 'HPP92_005207' => 'vpl', 'HPP92_016907' => 'vpl', 'HPP92_026669' => 'vpl', 'Hund11690' => 'sun', 'Hund13200' => 'sun', 'Hund18885' => 'sun', 'Hund18887' => 'sun', 'Lalb_Chr02g0159301' => 'lal', 'Lalb_Chr08g0240511' => 'lal', 'Lalb_Chr08g0240521' => 'lal', 'Lalb_Chr08g0240541' => 'lal', 'Lalb_Chr08g0240551' => 'lal', 'Lalb_Chr08g0240561' => 'lal', 'Lalb_Chr11g0066601' => 'lal', 'Lalb_Chr11g0066611' => 'lal', 'Lalb_Chr11g0066621' => 'lal', 'Lalb_Chr21g0311651' => 'lal', 'Lalb_Chr23g0271491' => 'lal', 'Lalb_Chr23g0271501' => 'lal', 'Lj1A1013G39' => 'lonja', 'Lj1g0000480' => 'lja', 'Lj1g0000917' => 'lja', 'Lj1g0004442' => 'lja', 'Lj2g0015851' => 'lja', 'Lj3A909T47' => 'lonja', 'Lj3A909T48' => 'lonja', 'Lj5C267T12' => 'lonja', 'Lj5g0022297' => 'lja', 'Lju41A10G41' => 'lonja', 'Lju41A26G21' => 'lonja', 'Lsat_1_v5_gn_2_134181' => 'lsa', 'Lsat_1_v5_gn_7_76800' => 'lsa', 'Lsat_1_v5_gn_8_4900' => 'lsa', 'Lsat_1_v5_gn_9_57980' => 'lsa', 'Manes.01G092700' => 'mes', 'Manes.06G157800' => 'mes', 'Manes.06G157900' => 'mes', 'Manes.07G025100' => 'mes', 'Manes.14G008196' => 'mes', 'Mapoly0003s0022' => 'mpo', 'Mapoly0041s0149' => 'mpo', 'Mapoly0123s0011' => 'mpo', 'MBI05_g10766_MAGBIO' => 'mbi', 'MBI06_g05040_MAGBIO' => 'mbi', 'MBI06_g06706_MAGBIO' => 'mbi', 'MBI07_g34227_MAGBIO' => 'mbi', 'MBI07_g45742_MAGBIO' => 'mbi', 'MCO16G439' => 'mco', 'MD00G1125500' => 'mdo', 'MD00G1167800' => 'mdo', 'MD01G1215900' => 'mdo', 'MD01G1216000' => 'mdo', 'MD07G1285800' => 'mdo', 'MD07G1285900' => 'mdo', 'MD08G1243400' => 'mdo', 'MD09G1053000' => 'mdo', 'MD12G1177100' => 'mdo', 'MD15G1437700' => 'mdo', 'Medtr1g028440' => 'mtr', 'Medtr3g090955' => 'mtr', 'Medtr3g090960' => 'mtr', 'Medtr5g025310' => 'mtr', 'Medtr6g012590' => 'mtr', 'Medtr7g011070' => 'mtr', 'MELO3C005872.2' => 'cme', 'MELO3C016483.2' => 'cme', 'Migut.F00238' => 'egut', 'Migut.F00239' => 'egut', 'Migut.F01047' => 'egut', 'Migut.H00935' => 'egut', 'Migut.N00845' => 'egut', 'MSTRG.5204' => 'ama', 'MSTRG.58' => 'ama', 'Nitab4.5_0000015g0310' => 'nta', 'Nitab4.5_0000568g0060' => 'nta', 'Nitab4.5_0001773g0060' => 'nta', 'Nitab4.5_0001773g0070' => 'nta', 'Nitab4.5_0002347g0020' => 'nta', 'Nitab4.5_0002589g0050' => 'nta', 'Nitab4.5_0002589g0120' => 'nta', 'Nitab4.5_0003281g0060' => 'nta', 'Nitab4.5_0003816g0050' => 'nta', 'Nitab4.5_0003893g0040' => 'nta', 'Nitab4.5_0003893g0060' => 'nta', 'Nitab4.5_0005625g0010' => 'nta', 'Nitab4.5_0005625g0030' => 'nta', 'Nitab4.5_0005644g0020' => 'nta', 'Nitab4.5_0007520g0010' => 'nta', 'Nn1g01835' => 'nnu', 'Nn3g17283' => 'nnu', 'Nn3g17284' => 'nnu', 'Nn3g19050' => 'nnu', 'Nn5g27502' => 'nnu', 'Oeu030849.1' => 'oeu', 'Oeu041345.2' => 'oeu', 'Oeu060977.1' => 'oeu', 'Oeu060978.1' => 'oeu', 'Oeu060979.1' => 'oeu', 'Os01g0619000' => 'osa', 'Os02g0257200' => 'osa', 'Os03g0376900' => 'osa', 'Os05g0586700' => 'osa', 'Os08g0191200' => 'osa', 'Os08g0436000' => 'osa', 'Os12g0197100' => 'osa', 'Peaxi162Scf00011g01426' => 'pax', 'Peaxi162Scf00129g00018' => 'pax', 'Peaxi162Scf00618g00536' => 'pax', 'Peaxi162Scf00904g00123' => 'pax', 'Peaxi162Scf00904g00127' => 'pax', 'PGR142G0753' => 'pgr', 'PGR142G2075' => 'pgr', 'PGR142G3566' => 'pgr', 'PGSC0003DMG400001427' => 'stu', 'PGSC0003DMG400002353' => 'stu', 'PGSC0003DMG400009074' => 'stu', 'PGSC0003DMG400009106' => 'stu', 'PGSC0003DMG400019613' => 'stu', 'PGSC0003DMG400024886' => 'stu', 'Phvul.004G030300' => 'pvu', 'Phvul.007G182100' => 'pvu', 'Phvul.008G037600' => 'pvu', 'Phvul.009G054151' => 'pvu', 'Phvul.009G137800' => 'pvu', 'Potri.004G123300' => 'ptr', 'Potri.004G225500' => 'ptr', 'Potri.012G029300' => 'ptr', 'Potri.012G031000' => 'ptr', 'Potri.015G020800' => 'ptr', 'Potri.015G021100' => 'ptr', 'Potri.015G021300' => 'ptr', 'Potri.015G021400' => 'ptr', 'Potri.017G085400' => 'ptr', 'Pp3c16_18970' => 'ppa', 'Pp3c19_9430' => 'ppa', 'Pp3c22_7830' => 'ppa', 'Pp3c25_3500' => 'ppa', 'Pp3c2_19140' => 'ppa', 'Pp3c3_31670' => 'ppa', 'Pp3s32_121' => 'ppa', 'PRCOL_00005058' => 'pco', 'Prupe.1G580800' => 'ppe', 'Prupe.2G308000' => 'ppe', 'Prupe.3G265700' => 'ppe', 'Psat1g072600' => 'psa', 'Psat2g146560' => 'psa', 'Psat3g200200' => 'psa', 'Psat5g079400' => 'psa', 'Psat5g079560' => 'psa', 'Psat6g038520' => 'psa', 'Psat6g138480' => 'psa', 'PSO013G0193' => 'pso', 'PSO017G0507' => 'pso', 'PSO063G6288' => 'pso', 'PSO135G0499' => 'pso', 'PSO170G5315' => 'pso', 'PSO384G1506' => 'pso', 'PSO478G1600' => 'pso', 'PSO782G2965' => 'pso', 'PSO832G0839' => 'pso', 'QL02p082558' => 'qlo', 'QL02p100861' => 'qlo', 'QL09p010723' => 'qlo', 'QL09p010742' => 'qlo', 'QL93p0270_0023' => 'qlo', 'RcHm_v2.0_Chr1g0380171' => 'rch', 'RcHm_v2.0_Chr1g0380181' => 'rch', 'RcHm_v2.0_Chr2g0167691' => 'rch', 'Rhsim02G0197500' => 'rsi', 'Rhsim03G0199900' => 'rsi', 'Rhsim04G0082700' => 'rsi', 'Rhsim05G0209200' => 'rsi', 'Rhsim07G0227600' => 'rsi', 'Rhsim07G0227800' => 'rsi', 'Rhsim08G0070500' => 'rsi', 'Rhsim09G0204100' => 'rsi', 'Rhsim09G0204200' => 'rsi', 'Rhsim09G0204300' => 'rsi', 'Rhsim10G0036800' => 'rsi', 'Rhsim11G0122100' => 'rsi', 'Rhsim12G0169000' => 'rsi', 'Sabra01G0171200' => 'sbr', 'Sabra03G0003100' => 'sbr', 'Sabra04G0091100' => 'sbr', 'Sabra12G0020500' => 'sbr', 'Sabra12G0020600' => 'sbr', 'Sabra15G0015900' => 'sbr', 'Sabra17G0075400' => 'sbr', 'SalBow1G1768' => 'sbo', 'SalBow4G1511' => 'sbo', 'SalBow4G1817' => 'sbo', 'SalBow4G2102' => 'sbo', 'SalBow8G2098' => 'sbo', 'Sc10g0003490' => 'sci', 'Sc13g0009620' => 'sci', 'Sc17g0003920' => 'sci', 'Sed0019412' => 'sed', 'Sed0023834' => 'sed', 'Sed0024329' => 'sed', 'Sed0026580' => 'sed', 'SEGI_14806' => 'sgi', 'SEGI_26116' => 'sgi', 'SEGI_30155' => 'sgi', 'SGA_v2.0_scaffold10G05257' => 'sas', 'SGA_v2.0_scaffold192G40573' => 'sas', 'SGA_v2.0_scaffold413G51185' => 'sas', 'SGA_v2.0_scaffold42G15899' => 'sas', 'SGA_v2.0_scaffold4G02435' => 'sas', 'SMO174G0128' => 'smo', 'SMO347G0394' => 'smo', 'SMO358G0426' => 'smo', 'Solyc01g103440.3' => 'sly', 'Solyc02g088110.4' => 'sly', 'Solyc03g007320.4' => 'sly', 'Solyc06g051910.3' => 'sly', 'Sopen01g045790' => 'spe', 'Sopen02g032820' => 'spe', 'Sopen03g003280' => 'spe', 'Sopen03g003300' => 'spe', 'Sopen06g017940' => 'spe', 'Sopen06g017950' => 'spe', 'Sp1g08460' => 'spa', 'Sp2g23180' => 'spa', 'Sp3g00970' => 'spa', 'Sp6g15360' => 'spa', 'TAR374G0160' => 'tar', 'TAR375G0118' => 'tar', 'TAR375G0325' => 'tar', 'TAR375G0337' => 'tar', 'TAR381G1040' => 'tar', 'TAR622G0930' => 'tar', 'TAR629G1462' => 'tar', 'TAR629G3422' => 'tar', 'TAR636G3288' => 'tar', 'THA.LOC104800290' => 'tha', 'THA.LOC104811931' => 'tha', 'THA.LOC104816783' => 'tha', 'THA.LOC104816816' => 'tha', 'THA.LOC104821024' => 'tha', 'THA.LOC104821367' => 'tha', 'Thecc.02G017200' => 'tca', 'Thecc.03G193600' => 'tca', 'Thecc.03G193700' => 'tca', 'Thecc.04G085000' => 'tca', 'Thhalv10005277m.g' => 'esa', 'Thhalv10007333m.g' => 'esa', 'Thhalv10016110m.g' => 'esa', 'Thhalv10020700m.g' => 'esa', 'TPR.G10775' => 'tpr', 'TPR.G17290' => 'tpr', 'TPR.G17305' => 'tpr', 'TPR.G18770' => 'tpr', 'TPR.G20325' => 'tpr', 'TPR.G20443' => 'tpr', 'TPR.G33308' => 'tpr', 'TPR.G33570' => 'tpr', 'TPR.G33653' => 'tpr', 'TPR.G36251' => 'tpr', 'TPR.G39558' => 'tpr', 'TPR.G5252' => 'tpr', 'TPR.G8800' => 'tpr', 'TWI15G1214' => 'twi', 'TWI23G0688' => 'twi', 'TWI32G1171' => 'twi', 'TWI34G1059' => 'twi', 'TWI39G0207' => 'twi', 'TWI39G1278' => 'twi', 'TWI60G0678' => 'twi', 'unitig_0.g1786' => 'ugi', 'unitig_747.g21850' => 'ugi', 'unitig_747.g21851' => 'ugi', 'unitig_8.g3587' => 'ugi', 'unitig_8.g3588' => 'ugi', 'vmacro01708' => 'vma', 'vmacro05685' => 'vma', 'vmacro06564' => 'vma', 'vmacro10108' => 'vma', 'vmacro10109' => 'vma', 'vmacro10110' => 'vma', 'VMungo0464G0522' => 'vmu', 'VMungo0647G2566' => 'vmu', 'VMungo0720G1793' => 'vmu', 'VMungo1309G0758' => 'vmu', 'VMungo1309G2916' => 'vmu', 'VMungo1383G0034' => 'vmu', 'Zm00001eb018360' => 'zma', 'Zm00001eb041470' => 'zma', 'Zm00001eb055660' => 'zma', 'Zm00001eb073170' => 'zma', 'Zm00001eb159620' => 'zma', 'Zm00001eb179660' => 'zma', 'Zm00001eb238160' => 'zma', 'Zm00001eb294330' => 'zma', 'Zm00001eb306920' => 'zma', 'Zm00001eb342350' => 'zma', 'Zm00001eb345000' => 'zma', 'Zm00001eb392150' => 'zma' ) $gf_id = 'HOM05D000974' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000974' ) $data_identifier = 'HOM05D000974' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 2, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 2, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 3, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 13, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 3, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1